GoogleScholar	https://scholar.google.com/citations?user=F_pNFksAAAAJ&hl=en

研究キーワード	research interests	Artificial Intelligence,Machine Learning,Data visualization,Vaccine Design,Systems Biology,Functional Genomics	Artificial Intelligence,Machine Learning,Data visualization,Vaccine Design,Systems Biology,Functional Genomics

研究分野	research research_areas	生命、健康、医療情報学,ゲノム生物学	Biological, health, and medical informatics,Genomics

学歴	education	2006年 － 2009年 慶應義塾大学 政策・メディア研究科 2000年 － 2005年 Technische Universität Berlin Elektrotechnik und Informatik 2006 － 2009 Keio University Graduate School of Media and Governance 2000 － 2005 Technische Universität Berlin Elektrotechnik und Informatik

経歴	experience	2024年11月 － 長崎大学 感染症研究出島特区 Associate Professor 2023年01月 － 2024年10月 The Systems Biology Institute Scientist 2017年11月 － 2022年12月 University of California San Diego School of Medicine Assistant Research Scientist 2015年04月 － 2017年10月 特定国立研究開発法人理化学研究所 ライフサイエンス技術基盤研究センター 2009年09月 － 2015年03月 特定国立研究開発法人理化学研究所 ライフサイエンス技術基盤研究センター 2024/11 － Nagasaki University DEJIMA Infectious Disease Research Alliance (DIDA) Associate Professor 2023/01 － 2024/10 The Systems Biology Institute Scientist 2017/11 － 2022/12 University of California San Diego School of Medicine Assistant Research Scientist 2015/04 － 2017/10 RIKEN RIKEN Center for Life Science Technologies 2009/09 － 2015/03 RIKEN RIKEN Center for Life Science Technologies

委員歴	committee memberships	2015年09月 － 2015年09月 Asia-Pacific Bioinformatics Network (APBioNet) and Japanese Society for Bioinformatics (JSBI) GIW/InCoB 2015 Program Committee 2015/09 － 2015/09 Asia-Pacific Bioinformatics Network (APBioNet) and Japanese Society for Bioinformatics (JSBI) GIW/InCoB 2015 Program Committee

所属学協会	association memberships

受賞	awards

論文	papers	Creating an engine of scientific discovery, an Indo-Japan perspective: learnings from IJNTC 2025 workshop Sucheendra K. Palaniappan,Moreno Zolfo,Satish Kottapalli,Ajay Sethi,Johan Nyström-Persson,Daniel Evans-Yamamoto,Jihun Choi,Anton Kratz,Srinivas Padmanabhan,Ryota Yamada,Yosuke Ozawa,Natalia Polouliakh,Ashwini Patil,Manas Kala,Tavpritesh Sethi,Ganesh Bagler,Jun Seita,Samik Ghosh,Ravindranath Kancherla,Hiroaki Kitano npj Systems Biology and Applications 2026年04月22日 Nicotinamide mononucleotide (NMN) alleviates the poly(I:C)-induced inflammatory response in human primary cell cultures. Hitomi Sano,Anton Kratz,Taiko Nishino,Haruna Imamura,Yuki Yoshida,Noriaki Shimizu,Hiroaki Kitano,Ayako Yachie Scientific reports 13巻1号11765頁-11765頁 2023年07月20日 A multi-scale map of protein assemblies in the DNA damage response. Anton Kratz,Minkyu Kim,Marcus R Kelly,Fan Zheng,Christopher A Koczor,Jianfeng Li,Keiichiro Ono,Yue Qin,Christopher Churas,Jing Chen,Rudolf T Pillich,Jisoo Park,Maya Modak,Rachel Collier,Kate Licon,Dexter Pratt,Robert W Sobol,Nevan J Krogan,Trey Ideker Cell systems 2023年05月16日 Recombination of repeat elements generates somatic complexity in human genomes Giovanni Pascarella,Chung Chau Hon,Kosuke Hashimoto,Annika Busch,Joachim Luginbühl,Callum Parr,Wing Hin Yip,Kazumi Abe,Anton Kratz,Alessandro Bonetti,Federico Agostini,Jessica Severin,Shigeo Murayama,Yutaka Suzuki,Stefano Gustincich,Martin Frith,Piero Carninci Cell 185巻16号3025頁-3040.e6頁 2022年08月 Interpretation of cancer mutations using a multiscale map of protein systems. Fan Zheng,Marcus R Kelly,Dana J Ramms,Marissa L Heintschel,Kai Tao,Beril Tutuncuoglu,John J Lee,Keiichiro Ono,Helene Foussard,Michael Chen,Kari A Herrington,Erica Silva,Sophie N Liu,Jing Chen,Christopher Churas,Nicholas Wilson,Anton Kratz,Rudolf T Pillich,Devin N Patel,Jisoo Park,Brent Kuenzi,Michael K Yu,Katherine Licon,Dexter Pratt,Jason F Kreisberg,Minkyu Kim,Danielle L Swaney,Xiaolin Nan,Stephanie I Fraley,J Silvio Gutkind,Nevan J Krogan,Trey Ideker Science (New York, N.Y.) 374巻6563号eabf3067頁- 2021年10月 Functional annotation of human long noncoding RNAs via molecular phenotyping Jordan A. Ramilowski,Chi Wai Yip,Saumya Agrawal,Jen-Chien Chang,Yari Ciani,Ivan V. Kulakovskiy,Mickaël Mendez,Jasmine Li Ching Ooi,John F. Ouyang,Nick Parkinson,Andreas Petri,Leonie Roos,Jessica Severin,Kayoko Yasuzawa,Imad Abugessaisa,Altuna Akalin,Ivan V. Antonov,Erik Arner,Alessandro Bonetti,Hidemasa Bono,Beatrice Borsari,Frank Brombacher,Christopher J.F. Cameron,Carlo Vittorio Cannistraci,Ryan Cardenas,Melissa Cardon,Howard Chang,Josée Dostie,Luca Ducoli,Alexander Favorov,Alexandre Fort,Diego Garrido,Noa Gil,Juliette Gimenez,Reto Guler,Lusy Handoko,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Kosuke Hashimoto,Norihito Hayatsu,Peter Heutink,Tetsuro Hirose,Eddie L. Imada,Masayoshi Itoh,Bogumil Kaczkowski,Aditi Kanhere,Emily Kawabata,Hideya Kawaji,Tsugumi Kawashima,S. Thomas Kelly,Miki Kojima,Naoto Kondo,Haruhiko Koseki,Tsukasa Kouno,Anton Kratz,Mariola Kurowska-Stolarska,Andrew Tae Jun Kwon,Jeffrey Leek,Andreas Lennartsson,Marina Lizio,Fernando López-Redondo,Joachim Luginbühl,Shiori Maeda,Vsevolod J. Makeev,Luigi Marchionni,Yulia A. Medvedeva,Aki Minoda,Ferenc Müller,Manuel Muñoz-Aguirre,Mitsuyoshi Murata,Hiromi Nishiyori,Kazuhiro R. Nitta,Shuhei Noguchi,Yukihiko Noro,Ramil Nurtdinov,Yasushi Okazaki,Valerio Orlando,Denis Paquette,Callum J.C. Parr,Owen J.L. Rackham,Patrizia Rizzu,Diego Fernando Sánchez Martinez,Albin Sandelin,Pillay Sanjana,Colin A.M. Semple,Youtaro Shibayama,Divya M. Sivaraman,Takahiro Suzuki,Suzannah C. Szumowski,Michihira Tagami,Martin S. Taylor,Chikashi Terao,Malte Thodberg,Supat Thongjuea,Vidisha Tripathi,Igor Ulitsky,Roberto Verardo,Ilya E. Vorontsov,Chinatsu Yamamoto,Robert S. Young,J. Kenneth Baillie,Alistair R.R. Forrest,Roderic Guigó,Michael M. Hoffman,Chung Chau Hon,Takeya Kasukawa,Sakari Kauppinen,Juha Kere,Boris Lenhard,Claudio Schneider,Harukazu Suzuki,Ken Yagi,Michiel J.L. de Hoon,Jay W. Shin,Piero Carninci Genome Research 30巻7号1060頁-1072頁 2020年07月 DEIVA: a web application for interactive visual analysis of differential gene expression profiles Jayson Harshbarger,Anton Kratz,Piero Carninci BMC GENOMICS 18巻 2017年01月 The devil in the details of RNA-seq Anton Kratz,Piero Carninci Nature Biotechnology 32巻9号882頁-884頁 2014年09月09日 Digital expression profiling of the compartmentalized translatome of Purkinje neurons Anton Kratz,Pascal Beguin,Megumi Kaneko,Takahiko Chimura,Ana Maria Suzuki,Atsuko Matsunaga,Sachi Kato,Nicolas Bertin,Timo Lassmann,Réjan Vigot,Piero Carninci,Charles Plessy,Thomas Launey Genome Research 24巻8号1396頁-1410頁 2014年08月 Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Fort A,Hashimoto K,Yamada D,Salimullah M,Keya CA,Saxena A,Bonetti A,Voineagu I,Bertin N,Kratz A,Noro Y,Wong CH,de Hoon M,Andersson R,Sandelin A,Suzuki H,Wei CL,Koseki H,FANTOM Consortium,Hasegawa Y,Forrest AR,Carninci P Nature genetics 46巻6号558頁-566頁 2014年06月 Creating an engine of scientific discovery, an Indo-Japan perspective: learnings from IJNTC 2025 workshop Sucheendra K. Palaniappan,Moreno Zolfo,Satish Kottapalli,Ajay Sethi,Johan Nyström-Persson,Daniel Evans-Yamamoto,Jihun Choi,Anton Kratz,Srinivas Padmanabhan,Ryota Yamada,Yosuke Ozawa,Natalia Polouliakh,Ashwini Patil,Manas Kala,Tavpritesh Sethi,Ganesh Bagler,Jun Seita,Samik Ghosh,Ravindranath Kancherla,Hiroaki Kitano npj Systems Biology and Applications 2026/04/22 Nicotinamide mononucleotide (NMN) alleviates the poly(I:C)-induced inflammatory response in human primary cell cultures. Hitomi Sano,Anton Kratz,Taiko Nishino,Haruna Imamura,Yuki Yoshida,Noriaki Shimizu,Hiroaki Kitano,Ayako Yachie Scientific reports 13.1.11765-11765 2023/07/20 A multi-scale map of protein assemblies in the DNA damage response. Anton Kratz,Minkyu Kim,Marcus R Kelly,Fan Zheng,Christopher A Koczor,Jianfeng Li,Keiichiro Ono,Yue Qin,Christopher Churas,Jing Chen,Rudolf T Pillich,Jisoo Park,Maya Modak,Rachel Collier,Kate Licon,Dexter Pratt,Robert W Sobol,Nevan J Krogan,Trey Ideker Cell systems 2023/05/16 Recombination of repeat elements generates somatic complexity in human genomes Giovanni Pascarella,Chung Chau Hon,Kosuke Hashimoto,Annika Busch,Joachim Luginbühl,Callum Parr,Wing Hin Yip,Kazumi Abe,Anton Kratz,Alessandro Bonetti,Federico Agostini,Jessica Severin,Shigeo Murayama,Yutaka Suzuki,Stefano Gustincich,Martin Frith,Piero Carninci Cell 185.16.3025-3040.e6 2022/08 Interpretation of cancer mutations using a multiscale map of protein systems. Fan Zheng,Marcus R Kelly,Dana J Ramms,Marissa L Heintschel,Kai Tao,Beril Tutuncuoglu,John J Lee,Keiichiro Ono,Helene Foussard,Michael Chen,Kari A Herrington,Erica Silva,Sophie N Liu,Jing Chen,Christopher Churas,Nicholas Wilson,Anton Kratz,Rudolf T Pillich,Devin N Patel,Jisoo Park,Brent Kuenzi,Michael K Yu,Katherine Licon,Dexter Pratt,Jason F Kreisberg,Minkyu Kim,Danielle L Swaney,Xiaolin Nan,Stephanie I Fraley,J Silvio Gutkind,Nevan J Krogan,Trey Ideker Science (New York, N.Y.) 374.6563.eabf3067- 2021/10 Functional annotation of human long noncoding RNAs via molecular phenotyping Jordan A. Ramilowski,Chi Wai Yip,Saumya Agrawal,Jen-Chien Chang,Yari Ciani,Ivan V. Kulakovskiy,Mickaël Mendez,Jasmine Li Ching Ooi,John F. Ouyang,Nick Parkinson,Andreas Petri,Leonie Roos,Jessica Severin,Kayoko Yasuzawa,Imad Abugessaisa,Altuna Akalin,Ivan V. Antonov,Erik Arner,Alessandro Bonetti,Hidemasa Bono,Beatrice Borsari,Frank Brombacher,Christopher J.F. Cameron,Carlo Vittorio Cannistraci,Ryan Cardenas,Melissa Cardon,Howard Chang,Josée Dostie,Luca Ducoli,Alexander Favorov,Alexandre Fort,Diego Garrido,Noa Gil,Juliette Gimenez,Reto Guler,Lusy Handoko,Jayson Harshbarger,Akira Hasegawa,Yuki Hasegawa,Kosuke Hashimoto,Norihito Hayatsu,Peter Heutink,Tetsuro Hirose,Eddie L. Imada,Masayoshi Itoh,Bogumil Kaczkowski,Aditi Kanhere,Emily Kawabata,Hideya Kawaji,Tsugumi Kawashima,S. Thomas Kelly,Miki Kojima,Naoto Kondo,Haruhiko Koseki,Tsukasa Kouno,Anton Kratz,Mariola Kurowska-Stolarska,Andrew Tae Jun Kwon,Jeffrey Leek,Andreas Lennartsson,Marina Lizio,Fernando López-Redondo,Joachim Luginbühl,Shiori Maeda,Vsevolod J. Makeev,Luigi Marchionni,Yulia A. Medvedeva,Aki Minoda,Ferenc Müller,Manuel Muñoz-Aguirre,Mitsuyoshi Murata,Hiromi Nishiyori,Kazuhiro R. Nitta,Shuhei Noguchi,Yukihiko Noro,Ramil Nurtdinov,Yasushi Okazaki,Valerio Orlando,Denis Paquette,Callum J.C. Parr,Owen J.L. Rackham,Patrizia Rizzu,Diego Fernando Sánchez Martinez,Albin Sandelin,Pillay Sanjana,Colin A.M. Semple,Youtaro Shibayama,Divya M. Sivaraman,Takahiro Suzuki,Suzannah C. Szumowski,Michihira Tagami,Martin S. Taylor,Chikashi Terao,Malte Thodberg,Supat Thongjuea,Vidisha Tripathi,Igor Ulitsky,Roberto Verardo,Ilya E. Vorontsov,Chinatsu Yamamoto,Robert S. Young,J. Kenneth Baillie,Alistair R.R. Forrest,Roderic Guigó,Michael M. Hoffman,Chung Chau Hon,Takeya Kasukawa,Sakari Kauppinen,Juha Kere,Boris Lenhard,Claudio Schneider,Harukazu Suzuki,Ken Yagi,Michiel J.L. de Hoon,Jay W. Shin,Piero Carninci Genome Research 30.7.1060-1072 2020/07 DEIVA: a web application for interactive visual analysis of differential gene expression profiles Jayson Harshbarger,Anton Kratz,Piero Carninci BMC GENOMICS 18. 2017/01 The devil in the details of RNA-seq Anton Kratz,Piero Carninci Nature Biotechnology 32.9.882-884 2014/09/09 Digital expression profiling of the compartmentalized translatome of Purkinje neurons Anton Kratz,Pascal Beguin,Megumi Kaneko,Takahiko Chimura,Ana Maria Suzuki,Atsuko Matsunaga,Sachi Kato,Nicolas Bertin,Timo Lassmann,Réjan Vigot,Piero Carninci,Charles Plessy,Thomas Launey Genome Research 24.8.1396-1410 2014/08 Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance. Fort A,Hashimoto K,Yamada D,Salimullah M,Keya CA,Saxena A,Bonetti A,Voineagu I,Bertin N,Kratz A,Noro Y,Wong CH,de Hoon M,Andersson R,Sandelin A,Suzuki H,Wei CL,Koseki H,FANTOM Consortium,Hasegawa Y,Forrest AR,Carninci P Nature genetics 46.6.558-566 2014/06 さらに表示する more

MISC

In Memory of Gottfried Kratz: Historian of Books and Librarianship Nadezda A. Egorova,Tamara P. Kovina Bibliography and Bibliology 1号120頁-125頁 2026年03月04日 Christian Schönbach 1965–2023 Anton Kratz,Shoba Ranganathan Bioinformatics Advances 3巻1号 2023年10月20日 In Memory of Gottfried Kratz: Historian of Books and Librarianship Nadezda A. Egorova,Tamara P. Kovina Bibliography and Bibliology 1.120-125 2026/03/04 Christian Schönbach 1965–2023 Anton Kratz,Shoba Ranganathan Bioinformatics Advances 3.1. 2023/10/20

書籍等出版物	books

講演・口頭発表等	conference	DNA修復のデータ駆動型モデルがDNA損傷誘発のダイナミクスを明らかにする クラッツ アントン The Biology of Genomes, Cold Spring Harbor Laboratory, New York, USA 2020年05月07日 2020年05月05日 2020年05月08日 A data-driven model of DNA repair reveals dynamics of DNA damage induction Anton Kratz The Biology of Genomes, Cold Spring Harbor Laboratory, New York, USA 2020/05/07 2020/05/05 2020/05/08

担当経験のある項目	teaching experience	細胞の階層モデル,RNA-seqワークフロー: 生データから生物学的洞察へ	Hierarchical Models of the Cell - Creation and applications,An RNA-seq workflow - From Raw Data to Biological Insight

Works	RNA-seqワークフロー: 生データから生物学的洞察へ クラッツ アントン 教材 2025年02月07日 - 2025年02月07日 An RNA-seq workflow - From Raw Data to Biological Insight Anton Kratz educational_materials 2025/02/07 - 2025/02/07

競争的資金等の研究課題	research grants

特許	patents

社会貢献活動	social contribution

メディア報道	media_coverage	プレスリリース: 国際科学誌に論文掲載：ニコチンアミドモノヌクレオチド（NMN）がヒト血管細胞の炎症反応を効果的に抑制 2023年07月 A New Map Reveals the Complicated World in Which Cells Seek to Repair Damaged DNA 2023年05月 体細胞における反復配列間の組換えを解析 2022年07月 長鎖ノンコーディングRNAのさまざまな機能 2020年07月 神経細胞で働くmRNAを網羅的に同定する新しい手法を確立 2014年06月 Genetic ‘junk’ may have its uses - Genome filler could have an important role in maintaining stem cell potency 2014年06月 Nicotinamide Mononucleotide (NMN) Effectively Suppresses Inflammatory Response in Human Vascular Cells 2023/07 A New Map Reveals the Complicated World in Which Cells Seek to Repair Damaged DNA 2023/05 DNA recombinations are widespread in human genomes and are implicated in both development and disease 2022/07 RNA biology provides the key to cell identity and health 2020/07 Cutting edge methods reveal what makes Purkinje neurons unique 2014/06 Genetic ‘junk’ may have its uses - Genome filler could have an important role in maintaining stem cell potency 2014/06

学術貢献活動	academic_contribution

その他	etc